1. Gardner, Joseph J., and Nanette R. Boyle. The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum. BMC Systems Biology 11.1 (2017): 4.
  2. Liberatore, Matthew W., et al. Effectiveness of cationically modified cellulose polymers for dewatering algae. Separation Science and Technology 51.5 (2016): 892-898.
  3. Aucoin, Hanna R., Joseph Gardner, and Nanette R. Boyle. Omics in Chlamydomonas for Biofuel Production. Lipids in Plant and Algae Development. Springer International Publishing, 2016. 447-469.
  4. Ramey, C. Josh, et al. Genome engineering in cyanobacteria: where we are and where we need to go. ACS synthetic biology 4.11 (2015): 1186-1196.
  5. Zeitoun, Ramsey I., et al. Multiplexed tracking of combinatorial genomic mutations in engineered cell populations. Nature biotechnology 33.6 (2015): 631-637.
  6. Schmollinger, Stefan, et al. Nitrogen-sparing mechanisms in Chlamydomonas affect the transcriptome, the proteome, and photosynthetic metabolism. The Plant Cell 26.4 (2014): 1410-1435.
  7. Blaby, Ian K., et al. Systems-level analysis of nitrogen starvation–induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant. The Plant Cell 25.11 (2013): 4305-4323.
  8. Woodruff, Lauren BA, Nanette R. Boyle, and Ryan T. Gill. Engineering improved ethanol production in Escherichia coli with a genome-wide approach. Metabolic engineering 17 (2013): 1-11.
  9. Boyle, Nanette R., et al. Recombineering to homogeneity: extension of multiplex recombineering to large‐scale genome editing. Biotechnology journal 8.5 (2013): 515-522.
  10. Spindler, Eileen C., et al. Genome-wide identification of genes conferring energy related resistance to a synthetic antimicrobial Peptide (bac8c). PloS one 8.1 (2013): e55052.
  11. Boyle, Nanette R., et al. Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas. Journal of Biological Chemistry 287.19 (2012): 15811-15825.
  12. Boyle, Nanette R., and Ryan T. Gill. Tools for genome-wide strain design and construction. Current opinion in biotechnology 23.5 (2012): 666-671.
  13. Boyle, Nanette R., and John A. Morgan. Computation of metabolic fluxes and efficiencies for biological carbon dioxide fixation. Metabolic engineering 13.2 (2011): 150-158.
  14. Boyle, Nanette R., and John A. Morgan. Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii. BMC systems biology 3.1 (2009): 4.
  15. Boyle, Nanette R., Avantika A. Shastri, and John A. Morgan. Network stoichiometry. Plant Metabolic Networks. Springer New York, 2009. 211-243.
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